Extract quality information of features
Arguments
- object
a
SummarizedExperimentorMetaboSetobject
Examples
data(example_set)
ex_set <- assess_quality(example_set)
quality(ex_set)
#> Feature_ID RSD RSD_r
#> HILIC_neg_259_9623a4_4322 HILIC_neg_259_9623a4_4322 0.12707508 0.15646529
#> HILIC_neg_108_1065a2_6121 HILIC_neg_108_1065a2_6121 0.46894349 0.37534706
#> HILIC_neg_158_23a1_4128 HILIC_neg_158_23a1_4128 0.56891078 0.18862347
#> HILIC_neg_251_0056a0_6161 HILIC_neg_251_0056a0_6161 0.36623078 0.38358448
#> HILIC_neg_401_52a4_211 HILIC_neg_401_52a4_211 0.15347768 0.22295233
#> HILIC_neg_400_7045a5_3842 HILIC_neg_400_7045a5_3842 0.22354434 0.28101448
#> HILIC_neg_304_014a7_1311 HILIC_neg_304_014a7_1311 0.57129653 0.22659424
#> HILIC_neg_276_6328a2_7734 HILIC_neg_276_6328a2_7734 0.47701070 0.33847090
#> HILIC_neg_118_9111a4_1865 HILIC_neg_118_9111a4_1865 0.12694380 0.07872284
#> HILIC_neg_446_9413a2_315 HILIC_neg_446_9413a2_315 0.39007260 0.41720232
#> HILIC_neg_127_5856a4_3758 HILIC_neg_127_5856a4_3758 0.15803472 0.16985602
#> HILIC_neg_303_2144a1_2372 HILIC_neg_303_2144a1_2372 0.36473881 0.10129443
#> HILIC_neg_366_6203a6_1825 HILIC_neg_366_6203a6_1825 0.23664221 0.24485178
#> HILIC_neg_258_7252a7_5445 HILIC_neg_258_7252a7_5445 0.22308889 0.34398624
#> HILIC_neg_301_2643a4_0372 HILIC_neg_301_2643a4_0372 0.39815312 0.17591485
#> HILIC_neg_224_4031a4_7409 HILIC_neg_224_4031a4_7409 0.10369981 0.13523049
#> HILIC_neg_424_8488a6_7736 HILIC_neg_424_8488a6_7736 0.56137374 0.64767955
#> HILIC_neg_131_2034a6_1385 HILIC_neg_131_2034a6_1385 0.38079023 0.17914419
#> HILIC_neg_236_4114a5_6302 HILIC_neg_236_4114a5_6302 0.67222725 0.38889485
#> HILIC_neg_411_0148a0_7484 HILIC_neg_411_0148a0_7484 0.34206668 0.41674428
#> HILIC_pos_288_6263a6_572 HILIC_pos_288_6263a6_572 0.67387760 1.04392635
#> HILIC_pos_331_1173a7_7822 HILIC_pos_331_1173a7_7822 0.42958384 0.59173482
#> HILIC_pos_139_4044a6_0388 HILIC_pos_139_4044a6_0388 0.19680632 0.13725389
#> HILIC_pos_132_7373a6_4146 HILIC_pos_132_7373a6_4146 0.42846248 0.35045397
#> HILIC_pos_298_6144a3_839 HILIC_pos_298_6144a3_839 0.60918534 0.67991858
#> HILIC_pos_410_9203a2_7329 HILIC_pos_410_9203a2_7329 0.60188460 0.40106253
#> HILIC_pos_145_8514a2_811 HILIC_pos_145_8514a2_811 0.20192013 0.13429388
#> HILIC_pos_306_0061a4_4049 HILIC_pos_306_0061a4_4049 0.39791341 0.24814963
#> HILIC_pos_425_8858a4_4494 HILIC_pos_425_8858a4_4494 0.91027313 0.82072873
#> HILIC_pos_436_332a6_1165 HILIC_pos_436_332a6_1165 0.64341531 0.87412556
#> HILIC_pos_255_0094a7_9288 HILIC_pos_255_0094a7_9288 0.53749665 0.12571686
#> HILIC_pos_417_1474a2_8239 HILIC_pos_417_1474a2_8239 0.32687211 0.37713115
#> HILIC_pos_297_8334a0_6647 HILIC_pos_297_8334a0_6647 0.33858534 0.44586218
#> HILIC_pos_449_2162a0_7574 HILIC_pos_449_2162a0_7574 0.89262281 0.76320619
#> HILIC_pos_197_7438a7_72 HILIC_pos_197_7438a7_72 0.42229714 0.11396462
#> HILIC_pos_141_601a7_387 HILIC_pos_141_601a7_387 0.57063424 0.21084416
#> HILIC_pos_448_1172a6_8567 HILIC_pos_448_1172a6_8567 0.57191397 0.75817627
#> HILIC_pos_346_6405a3_2719 HILIC_pos_346_6405a3_2719 0.19908471 0.19513155
#> HILIC_pos_334_3285a1_7395 HILIC_pos_334_3285a1_7395 0.95066218 1.48260000
#> HILIC_pos_215_5364a2_6707 HILIC_pos_215_5364a2_6707 0.25768581 0.26613536
#> RP_neg_458_0877a1_5798 RP_neg_458_0877a1_5798 0.51511667 0.39412937
#> RP_neg_365_8511a5_6086 RP_neg_365_8511a5_6086 0.13196683 0.11884625
#> RP_neg_369_5116a6_4389 RP_neg_369_5116a6_4389 0.50213387 0.29575289
#> RP_neg_222_4828a6_0392 RP_neg_222_4828a6_0392 0.39380837 0.17785692
#> RP_neg_114_84a3_0917 RP_neg_114_84a3_0917 0.59615537 0.45940622
#> RP_neg_317_554a3_063 RP_neg_317_554a3_063 0.40852428 0.34505883
#> RP_neg_419_897a3_9617 RP_neg_419_897a3_9617 0.38998830 0.19334017
#> RP_neg_493_3039a6_7816 RP_neg_493_3039a6_7816 0.23048595 0.18941765
#> RP_neg_359_0517a7_3652 RP_neg_359_0517a7_3652 0.42106549 0.28993814
#> RP_neg_435_8009a6_2215 RP_neg_435_8009a6_2215 0.41988962 0.36783165
#> RP_neg_358_2061a5_2818 RP_neg_358_2061a5_2818 0.55415671 0.47604648
#> RP_neg_397_2502a3_7998 RP_neg_397_2502a3_7998 0.39847317 0.26118593
#> RP_neg_165_9294a3_4261 RP_neg_165_9294a3_4261 0.15710763 0.18322488
#> RP_neg_413_1764a3_6741 RP_neg_413_1764a3_6741 0.43055303 0.37796827
#> RP_neg_115_4062a7_7329 RP_neg_115_4062a7_7329 0.21272908 0.20287325
#> RP_neg_300_1295a1_6959 RP_neg_300_1295a1_6959 0.45191473 0.34392691
#> RP_neg_177_6084a5_2913 RP_neg_177_6084a5_2913 0.53619006 0.72638211
#> RP_neg_134_1196a2_9606 RP_neg_134_1196a2_9606 0.70256608 1.21612235
#> RP_neg_139_4456a4_1251 RP_neg_139_4456a4_1251 0.36687539 0.08365634
#> RP_neg_385_6867a4_136 RP_neg_385_6867a4_136 0.50375370 0.50453857
#> RP_pos_490_9235a4_0176 RP_pos_490_9235a4_0176 0.72463716 0.93660528
#> RP_pos_383_4976a2_6503 RP_pos_383_4976a2_6503 0.19925793 0.21384528
#> RP_pos_344_9911a1_9656 RP_pos_344_9911a1_9656 0.26031934 0.32975456
#> RP_pos_117_7095a4_0945 RP_pos_117_7095a4_0945 0.42498465 0.33605494
#> RP_pos_294_9596a6_7569 RP_pos_294_9596a6_7569 0.51579843 0.62631285
#> RP_pos_460_4815a0_8843 RP_pos_460_4815a0_8843 0.37387163 0.17138729
#> RP_pos_272_3545a3_5592 RP_pos_272_3545a3_5592 0.41427454 0.27305364
#> RP_pos_409_2445a2_4149 RP_pos_409_2445a2_4149 0.16879375 0.21111468
#> RP_pos_245_9925a3_6251 RP_pos_245_9925a3_6251 0.35358939 0.37944231
#> RP_pos_369_1069a1_6271 RP_pos_369_1069a1_6271 0.39260062 0.53603444
#> RP_pos_174_0715a4_3465 RP_pos_174_0715a4_3465 0.09646719 0.12329417
#> RP_pos_324_6195a4_7743 RP_pos_324_6195a4_7743 0.29174280 0.41363495
#> RP_pos_149_432a4_1341 RP_pos_149_432a4_1341 0.29034224 0.21532790
#> RP_pos_461_5891a7_1505 RP_pos_461_5891a7_1505 0.31217302 0.38504079
#> RP_pos_458_263a4_3477 RP_pos_458_263a4_3477 0.56914974 0.59631492
#> RP_pos_226_7218a3_1371 RP_pos_226_7218a3_1371 0.41925767 0.29868966
#> RP_pos_280_3779a4_0424 RP_pos_280_3779a4_0424 0.12602572 0.17391494
#> RP_pos_447_3232a2_2393 RP_pos_447_3232a2_2393 0.72925673 0.94840162
#> RP_pos_453_282a5_128 RP_pos_453_282a5_128 0.66342430 1.13371781
#> RP_pos_153_9636a7_9986 RP_pos_153_9636a7_9986 0.57056405 0.18389058
#> D_ratio D_ratio_r
#> HILIC_neg_259_9623a4_4322 0.3630223 0.4752706
#> HILIC_neg_108_1065a2_6121 1.2029517 1.2234263
#> HILIC_neg_158_23a1_4128 1.0192375 0.5091718
#> HILIC_neg_251_0056a0_6161 0.8753266 1.0896262
#> HILIC_neg_401_52a4_211 0.4198898 0.7102902
#> HILIC_neg_400_7045a5_3842 0.6777461 1.4058192
#> HILIC_neg_304_014a7_1311 1.0182677 0.5567760
#> HILIC_neg_276_6328a2_7734 1.1877664 0.7969991
#> HILIC_neg_118_9111a4_1865 0.3082888 0.3192879
#> HILIC_neg_446_9413a2_315 0.7091183 0.5989086
#> HILIC_neg_127_5856a4_3758 0.4770885 0.6458792
#> HILIC_neg_303_2144a1_2372 0.8781714 0.3358644
#> HILIC_neg_366_6203a6_1825 0.6513263 0.6762228
#> HILIC_neg_258_7252a7_5445 0.5639172 1.0462808
#> HILIC_neg_301_2643a4_0372 1.0183228 0.6470639
#> HILIC_neg_224_4031a4_7409 0.2546548 0.4726859
#> HILIC_neg_424_8488a6_7736 1.1798674 1.0309769
#> HILIC_neg_131_2034a6_1385 0.9339485 0.5905929
#> HILIC_neg_236_4114a5_6302 1.0414499 0.5519452
#> HILIC_neg_411_0148a0_7484 0.7626770 0.7938857
#> HILIC_pos_288_6263a6_572 0.9653119 0.8608316
#> HILIC_pos_331_1173a7_7822 0.9726070 1.2571288
#> HILIC_pos_139_4044a6_0388 0.6043078 0.4983795
#> HILIC_pos_132_7373a6_4146 1.1625074 1.2522508
#> HILIC_pos_298_6144a3_839 1.1612640 2.1392856
#> HILIC_pos_410_9203a2_7329 1.6445420 1.2988009
#> HILIC_pos_145_8514a2_811 0.5557161 0.4224754
#> HILIC_pos_306_0061a4_4049 1.1720521 0.8476907
#> HILIC_pos_425_8858a4_4494 0.9197445 0.4776995
#> HILIC_pos_436_332a6_1165 1.0020054 0.9748927
#> HILIC_pos_255_0094a7_9288 1.2006149 0.4008777
#> HILIC_pos_417_1474a2_8239 0.9740816 1.0145135
#> HILIC_pos_297_8334a0_6647 0.8001488 1.1183432
#> HILIC_pos_449_2162a0_7574 3.2167406 3.6318544
#> HILIC_pos_197_7438a7_72 1.0191488 0.3594500
#> HILIC_pos_141_601a7_387 1.0276931 0.5660193
#> HILIC_pos_448_1172a6_8567 1.0552679 0.9829172
#> HILIC_pos_346_6405a3_2719 0.5072603 0.5677751
#> HILIC_pos_334_3285a1_7395 1.1393471 0.8248397
#> HILIC_pos_215_5364a2_6707 0.6619884 0.5843188
#> RP_neg_458_0877a1_5798 1.1559081 1.1226069
#> RP_neg_365_8511a5_6086 0.3741224 0.4553934
#> RP_neg_369_5116a6_4389 1.0656272 0.5253161
#> RP_neg_222_4828a6_0392 0.8526282 0.4632986
#> RP_neg_114_84a3_0917 1.2407857 1.3779200
#> RP_neg_317_554a3_063 1.1369980 1.1986431
#> RP_neg_419_897a3_9617 1.0694334 0.6622514
#> RP_neg_493_3039a6_7816 0.5061049 0.3603547
#> RP_neg_359_0517a7_3652 0.8197663 0.7723246
#> RP_neg_435_8009a6_2215 1.1537033 1.1440327
#> RP_neg_358_2061a5_2818 1.0708697 0.9891952
#> RP_neg_397_2502a3_7998 1.0977768 0.9379080
#> RP_neg_165_9294a3_4261 0.3941084 0.6175005
#> RP_neg_413_1764a3_6741 0.8849816 0.8870331
#> RP_neg_115_4062a7_7329 0.8285821 0.9840375
#> RP_neg_300_1295a1_6959 1.1100580 1.1955456
#> RP_neg_177_6084a5_2913 0.9992095 0.9939263
#> RP_neg_134_1196a2_9606 1.2180729 1.9630173
#> RP_neg_139_4456a4_1251 0.7364994 0.2003024
#> RP_neg_385_6867a4_136 1.3562726 1.5716203
#> RP_pos_490_9235a4_0176 1.1252248 0.8016981
#> RP_pos_383_4976a2_6503 0.4631904 0.6695989
#> RP_pos_344_9911a1_9656 0.7832216 0.9713117
#> RP_pos_117_7095a4_0945 1.0362239 0.8993951
#> RP_pos_294_9596a6_7569 0.9911231 1.0643144
#> RP_pos_460_4815a0_8843 1.0013768 0.4468314
#> RP_pos_272_3545a3_5592 1.0894427 1.0767764
#> RP_pos_409_2445a2_4149 0.4900429 0.6451052
#> RP_pos_245_9925a3_6251 0.7010870 0.7917018
#> RP_pos_369_1069a1_6271 0.9449390 1.2330565
#> RP_pos_174_0715a4_3465 0.2885651 0.4318497
#> RP_pos_324_6195a4_7743 0.5754641 0.7587660
#> RP_pos_149_432a4_1341 0.6021706 0.4032853
#> RP_pos_461_5891a7_1505 0.7870675 1.1175361
#> RP_pos_458_263a4_3477 1.1429598 1.1488426
#> RP_pos_226_7218a3_1371 0.9868424 1.0691755
#> RP_pos_280_3779a4_0424 0.2530656 0.3707874
#> RP_pos_447_3232a2_2393 1.1069458 1.2070680
#> RP_pos_453_282a5_128 1.4650567 2.2289907
#> RP_pos_153_9636a7_9986 1.0755973 0.4391429